From LaBRI - Laboratoire Bordelais de Recherche en Informatique

Publications: MaBioVis2006

Publications de l'équipe MaBioVis pour l'année 2006

Années: 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013

1. B. Pinaud. Contribution à la visualisation des connaissances par des graphes dans une mémoire d'entreprise : application sur le serveur Atanor. PhD thesis, Université Sciences et Technologies - Bordeaux I, 2006.
2. R. Uricaru, L. Brehelin, and E. Rivals. A new type of hidden markov models to predict complex motif organization in protein sequences. In Integrative Post-Genomics, page 43, 2006.
3. G. Melançon, C. Charnet, B. Bonu, H. Albernhe-Giordan, and C. Pélissier. Analysis of the effective uses of the digital workspace in higher education : the case of the languedoc-roussillon digital university 2006. In EUNIS'06- Is Information Technology Shaping The Future Of Higher Education ?, page 1, 2006.
4. G. Melançon, F. Jourdan, A. Paris, and P.-Y. Koenig. Multiscale scatterplot matrix for visual and interactive exploration of metabonomics data. In F. P. Pierre Levy, editor, Visual Information Expert Workshop, Lecture Notes in Computer Science, pages 202-215. Springer, 2006.
5. G. Melançon. Just how dense are dense graphs in the real world? a methodological note. In G. S. Enrico Bertini, Catherine Plaisant, editor, BELIV 2006: BEyond time and errors: novel evaLuation methods for Information Visualization (AVI Workshop), pages 75-81. ACM, 2006.
6. M. Delest, J.-M. Fédou, and G. Melançon. A quality measure for multi-level community structure. In SYNASC'06: 8th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing, pages 63-68, 2006.
7. M. Nikolski. Protein families within hemiascomycetes. In Yeast Genome 10th Anniversary, 2006.
8. D. J. Sherman. The génolevures database. In Yeast Genome 10th Anniversary, 2006.
9. D. J. Sherman. Mining the hemiascomycete yeasts. In Yeast Systems Biology 1st Workshop, 2006.
10. A. Barré, V. Jouffe, M. Nikolski, A. De Daruvar, A. Blanchard, and P. Sirand-Pugnet. Annotation transfer based on orthology relationships: reannotation of mycoplasma genomes from the pneumoniae group. In JOBIM, 2006.
11. B. Pinaud, P. Kuntz, and F. Picarougne. The website for graph visualization software references (gvsr). In Graph Drawing: 14th Int. Symp., GD 2006, volume 4372 of Lecture Notes in Computer Science, pages 440-441, 2006.
12. B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Visualisation en gestion des connaissances - développement d'un nouveau modèle graphique graph'atanor. In Extraction et Gestion des Connaissances (EGC'06), volume RNTI-E-6 of Revue des Nouvelles Technologies de l'Information (RNTI), pages 311-322. Cépaduès, 2006.
13. B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Graphical visualization in the knowledge management system atanor. In I-KNOW'06, 6th Int. Conf. on Knowledge Management, 2006.
14. H. Soueidan, M. Nikolski, and G. Sutre. Model checking alltl properties for set automata. In MOVEP, pages 203-209, 2006.
15. G. Bailly, D. Auber, and L. Nigay. From visualization to manipulation of rna secondary and tertiary structures. In 10th International Conference on Information Visualisation, (IV06), pages 107-116, 2006.
16. D. Auber, L. Nigay, and G. Bailly. Navrna: Visualization - exploration - editing of rna. In AVI 06: Proceedings of the International Conference on Advanced Visual Interfaces, pages 504-507, 2006.
17. I. Ituarte, A. Ouangraoua, and P. Ferraro. Pytreematch : a python based software for comparing rna secondary structure. In JOBIM, page 127, 2006.
18. R. Bourqui, D. Auber, V. Lacroix, and F. Jourdan. Metabolic network visualization using constraint planar graph drawing algorithm. In IV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), pages 489 - 496, 2006.
19. R. Bourqui, D. Auber, V. Lacroix, and F. Jourdan. Un algorithme contraint de dessin de graphe planaire pour la visualisation de réseaux métaboliques. In Quatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006.
20. P. Hanna and P. Ferraro. Mirex symbolic music similarity. In Second annual Music Information Retrieval Evaluation eXchange (MIREX), pages 90-91, 2006.
21. V. Segura, A. Ouangraoua, P. Ferraro, and E. Costes. Comparison of tree architecture using tree edit distances: Application to two-year-old apple tree. In XIII Eucarpia, biometrics in plant breeding section meeting, page 21, 2006.
22. P. Peterlongo, J. Allali, and M.-F. Sagot. The gapped-factor tree. In Prague Stringology Conference 2006, pages 182-196, 2006.
23. M. Diouf, S. Maabout, and K. Musumbu. Standard business rules language: Why and how? In International Conference on Artificial Intelligence (ICAI), volume 2, pages 414-419. Hamid R. Arabnia, 2006.
24. P. Kuntz, R. Lehn, F. Guillet, and B. Pinaud. Découverte interactive de règles d'association via une interface visuelle. In P. Kuntz and F. Poulet, editors, Visualisation en Extraction des Connaissances, volume RNTI-E-7, pages 113-125. Cépaduès, 2006.
25. A. Delaherche, E. Bon, A. Dupé, M. Lucas, B. Arveiler, A. De Daruvar, and A. Lonvaud-Funel. Intraspecific diversity of oenococcus oeni strains determined by sequence analysis of target genes. Applied Microbiology and Biotechnology, 73(2):394-403, 2006.
26. P. Kuntz, B. Pinaud, and R. Lehn. Minimizing crossings in a hierarchical digraphs with a hybridized genetic algorithm. Journal of Heuristics, 12(1-2):23-36, 2006.
27. B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Graphical visualization in the knowledge management system atanor. J.UCS Journal of Universal Computer Science, 2006.
28. B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Visualisation en gestion des connaissances, développement d'un nouveau modèle graphique graph'atanor. REVUE DES NOUVELLES TECHNOLOGIES DE L'INFORMATION, E(6):311-322, 2006.
29. S. Brlek, S. Dulucq, A. Ladouceur, and L. Vuillon. Combinatorial properties of smooth infinite words. Theoretical Computer Science, 352(1-3):306-317, 2006.
30. P. Thebault, S. Degivry, T. Schiex, and C. Gaspin. Searching rna motifs and their intermolecular contacts with constraint networks. Bioinformatics, 22(17):2074-80, 2006.
31. A. Valenti, A. Napoli, M. Ferrara, M. Nadal, M. Rossi, and M. Ciaramella. Selective degradation of reverse gyrase and dna fragmentation induced by alkylating agent in the archaeon sulfolobus solfataricus. Nucleic Acids Res, 14:14;34(7):2098-108, 2006.
32. D. Auber, M. Delest, S. Dulucq, and J.-P. Domenger. Efficient drawing and comparison of rna secondary structure. Journal of Graph Algorithms and Applications, 10:329-351, 2006.
33. M. Delest, A. Don, and J. Benois-Pineau. Dag based visual interfaces for navigation in index vidéo content. Multimedia Tools and Applications, 31:51-72, 2006.
34. D. Auber and P. Mary. Mise en place dun mécanisme de plugins en c++. Programmation sous Linux, pages 74-79, 2006.
35. D. Archambault, T. Munzner, and D. Auber. Smashing peacocks further: Drawing quasi-trees from biconnected components. IEEE Transactions on Visualization and Computer Graphics, 12:813-820, 2006.
36. C. Plomion, C. Lalanne, S. Claverol, H. Meddour, A. Kohler, M.-B. Bogeat-Triboulot, A. Barré, G. Le Provost, H. Dumazet, D. Jacob, C. Bastien, E. Dreyer, A. De Daruvar, J.-M. Guehl, J.-M. Schmitter, F. Martin, and M. Bonneu. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics, 6:6509-6527, 2006.
37. D. J. Sherman, P. Durrens, F. Iragne, E. Beyne, M. Nikolski, and J.-L. Souciet. Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. Nucleic Acids Res, 34(Database issue), 2006.
38. M. Dobrijevic and I. Dutour. A random graphs model for the study of chemical complexity in planetary atmospheres. Planetary and Space Science, 54:287-295, 2006.

Années: 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013