Publications de l'équipe MaBioVis pour l'année 2006
Années: 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013
- B. Pinaud. Contribution à la visualisation des connaissances par des graphes dans une mémoire d'entreprise : application sur le serveur Atanor. PhD thesis, Université Sciences et Technologies - Bordeaux I, 2006.
- R. Uricaru, L. Brehelin, and E. Rivals. A new type of hidden markov models to predict complex motif organization in protein sequences. In Integrative Post-Genomics, page 43, 2006.
- G. Melançon, C. Charnet, B. Bonu, H. Albernhe-Giordan, and C. Pélissier. Analysis of the effective uses of the digital workspace in higher education : the case of the languedoc-roussillon digital university 2006. In EUNIS'06- Is Information Technology Shaping The Future Of Higher Education ?, page 1, 2006.
- G. Melançon, F. Jourdan, A. Paris, and P.-Y. Koenig. Multiscale scatterplot matrix for visual and interactive exploration of metabonomics data. In F. P. Pierre Levy, editor, Visual Information Expert Workshop, Lecture Notes in Computer Science, pages 202-215. Springer, 2006.
- G. Melançon. Just how dense are dense graphs in the real world? a methodological note. In G. S. Enrico Bertini, Catherine Plaisant, editor, BELIV 2006: BEyond time and errors: novel evaLuation methods for Information Visualization (AVI Workshop), pages 75-81. ACM, 2006.
- M. Delest, J.-M. Fédou, and G. Melançon. A quality measure for multi-level community structure. In SYNASC'06: 8th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing, pages 63-68, 2006.
- M. Nikolski. Protein families within hemiascomycetes. In Yeast Genome 10th Anniversary, 2006.
- D. J. Sherman. The génolevures database. In Yeast Genome 10th Anniversary, 2006.
- D. J. Sherman. Mining the hemiascomycete yeasts. In Yeast Systems Biology 1st Workshop, 2006.
- A. Barré, V. Jouffe, M. Nikolski, A. De Daruvar, A. Blanchard, and P. Sirand-Pugnet. Annotation transfer based on orthology relationships: reannotation of mycoplasma genomes from the pneumoniae group. In JOBIM, 2006.
- B. Pinaud, P. Kuntz, and F. Picarougne. The website for graph visualization software references (gvsr). In Graph Drawing: 14th Int. Symp., GD 2006, volume 4372 of Lecture Notes in Computer Science, pages 440-441, 2006.
- B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Visualisation en gestion des connaissances - développement d'un nouveau modèle graphique graph'atanor. In Extraction et Gestion des Connaissances (EGC'06), volume RNTI-E-6 of Revue des Nouvelles Technologies de l'Information (RNTI), pages 311-322. Cépaduès, 2006.
- B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Graphical visualization in the knowledge management system atanor. In I-KNOW'06, 6th Int. Conf. on Knowledge Management, 2006.
- H. Soueidan, M. Nikolski, and G. Sutre. Model checking alltl properties for set automata. In MOVEP, pages 203-209, 2006.
- G. Bailly, D. Auber, and L. Nigay. From visualization to manipulation of rna secondary and tertiary structures. In 10th International Conference on Information Visualisation, (IV06), pages 107-116, 2006.
- D. Auber, L. Nigay, and G. Bailly. Navrna: Visualization - exploration - editing of rna. In AVI 06: Proceedings of the International Conference on Advanced Visual Interfaces, pages 504-507, 2006.
- I. Ituarte, A. Ouangraoua, and P. Ferraro. Pytreematch : a python based software for comparing rna secondary structure. In JOBIM, page 127, 2006.
- R. Bourqui, D. Auber, V. Lacroix, and F. Jourdan. Metabolic network visualization using constraint planar graph drawing algorithm. In IV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), pages 489 - 496, 2006.
- R. Bourqui, D. Auber, V. Lacroix, and F. Jourdan. Un algorithme contraint de dessin de graphe planaire pour la visualisation de réseaux métaboliques. In Quatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006.
- P. Hanna and P. Ferraro. Mirex symbolic music similarity. In Second annual Music Information Retrieval Evaluation eXchange (MIREX), pages 90-91, 2006.
- V. Segura, A. Ouangraoua, P. Ferraro, and E. Costes. Comparison of tree architecture using tree edit distances: Application to two-year-old apple tree. In XIII Eucarpia, biometrics in plant breeding section meeting, page 21, 2006.
- P. Peterlongo, J. Allali, and M.-F. Sagot. The gapped-factor tree. In Prague Stringology Conference 2006, pages 182-196, 2006.
- M. Diouf, S. Maabout, and K. Musumbu. Standard business rules language: Why and how? In International Conference on Artificial Intelligence (ICAI), volume 2, pages 414-419. Hamid R. Arabnia, 2006.
- P. Kuntz, R. Lehn, F. Guillet, and B. Pinaud. Découverte interactive de règles d'association via une interface visuelle. In P. Kuntz and F. Poulet, editors, Visualisation en Extraction des Connaissances, volume RNTI-E-7, pages 113-125. Cépaduès, 2006.
- A. Delaherche, E. Bon, A. Dupé, M. Lucas, B. Arveiler, A. De Daruvar, and A. Lonvaud-Funel. Intraspecific diversity of oenococcus oeni strains determined by sequence analysis of target genes. Applied Microbiology and Biotechnology, 73(2):394-403, 2006.
- P. Kuntz, B. Pinaud, and R. Lehn. Minimizing crossings in a hierarchical digraphs with a hybridized genetic algorithm. Journal of Heuristics, 12(1-2):23-36, 2006.
- B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Graphical visualization in the knowledge management system atanor. J.UCS Journal of Universal Computer Science, 2006.
- B. Pinaud, P. Kuntz, F. Guillet, and V. Philippé. Visualisation en gestion des connaissances, développement d'un nouveau modèle graphique graph'atanor. REVUE DES NOUVELLES TECHNOLOGIES DE L'INFORMATION, E(6):311-322, 2006.
- S. Brlek, S. Dulucq, A. Ladouceur, and L. Vuillon. Combinatorial properties of smooth infinite words. Theoretical Computer Science, 352(1-3):306-317, 2006.
- P. Thebault, S. Degivry, T. Schiex, and C. Gaspin. Searching rna motifs and their intermolecular contacts with constraint networks. Bioinformatics, 22(17):2074-80, 2006.
- A. Valenti, A. Napoli, M. Ferrara, M. Nadal, M. Rossi, and M. Ciaramella. Selective degradation of reverse gyrase and dna fragmentation induced by alkylating agent in the archaeon sulfolobus solfataricus. Nucleic Acids Res, 14:14;34(7):2098-108, 2006.
- D. Auber, M. Delest, S. Dulucq, and J.-P. Domenger. Efficient drawing and comparison of rna secondary structure. Journal of Graph Algorithms and Applications, 10:329-351, 2006.
- M. Delest, A. Don, and J. Benois-Pineau. Dag based visual interfaces for navigation in index vidéo content. Multimedia Tools and Applications, 31:51-72, 2006.
- D. Auber and P. Mary. Mise en place dun mécanisme de plugins en c++. Programmation sous Linux, pages 74-79, 2006.
- D. Archambault, T. Munzner, and D. Auber. Smashing peacocks further: Drawing quasi-trees from biconnected components. IEEE Transactions on Visualization and Computer Graphics, 12:813-820, 2006.
- C. Plomion, C. Lalanne, S. Claverol, H. Meddour, A. Kohler, M.-B. Bogeat-Triboulot, A. Barré, G. Le Provost, H. Dumazet, D. Jacob, C. Bastien, E. Dreyer, A. De Daruvar, J.-M. Guehl, J.-M. Schmitter, F. Martin, and M. Bonneu. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics, 6:6509-6527, 2006.
- D. J. Sherman, P. Durrens, F. Iragne, E. Beyne, M. Nikolski, and J.-L. Souciet. Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. Nucleic Acids Res, 34(Database issue), 2006.
- M. Dobrijevic and I. Dutour. A random graphs model for the study of chemical complexity in planetary atmospheres. Planetary and Space Science, 54:287-295, 2006.
Années: 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013